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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs910316 1 rs4903284 chr14:75592483 EIF2B2 chr14:75469612-75476292:+ 0.19 5.1 4.83E-7 Height
THCA cis rs910316 1 rs4903284 chr14:75592483 MLH3 chr14:75480467-75518235:- 0.3 9.03 4.27E-18 Height
THCA cis rs910316 1 rs4903284 chr14:75592483 RPS6KL1 chr14:75372347-75389958:- 0.32 6.91 1.57E-11 Height
THCA cis rs910316 1 rs4903289 chr14:75623988 EIF2B2 chr14:75469612-75476292:+ -0.2 -5.36 1.3E-7 Height
THCA cis rs910316 1 rs4903289 chr14:75623988 MLH3 chr14:75480467-75518235:- -0.3 -8.86 1.61E-17 Height
THCA cis rs910316 1 rs4903289 chr14:75623988 RPS6KL1 chr14:75372347-75389958:- -0.32 -6.86 2.15E-11 Height
THCA cis rs935334 1 rs4903386 chr14:76669658 ESRRB chr14:76837690-76968178:+ 0.32 5.18 3.21E-7 Blood pressure
THCA cis rs6574644 1 rs4903977 chr14:81772095 STON2 chr14:81727000-81893748:- 0.21 4.2 3.16E-5 Obesity-related traits
THCA cis rs6574644 1 rs4903979 chr14:81778158 STON2 chr14:81727000-81893748:- 0.21 4.2 3.16E-5 Obesity-related traits
THCA cis rs6574644 1 rs4903980 chr14:81778263 STON2 chr14:81727000-81893748:- 0.21 4.2 3.16E-5 Obesity-related traits
THCA cis rs4905558 1 rs4905546 chr14:97278652 VRK1 chr14:97263684-97347950:+ 0.17 3.99 7.51E-5 Neutrophil count
THCA cis rs4905558 1 rs4905552 chr14:97307224 VRK1 chr14:97263684-97347950:+ 0.17 3.89 0.000114 Neutrophil count
THCA cis rs4905558 1 rs4905553 chr14:97316102 VRK1 chr14:97263684-97347950:+ 0.17 3.87 0.000122 Neutrophil count
THCA cis rs4905558 1 rs4905555 chr14:97336535 VRK1 chr14:97263684-97347950:+ 0.17 3.97 8.34E-5 Neutrophil count
THCA cis rs4905558 1 rs4905558 chr14:97345806 VRK1 chr14:97263684-97347950:+ 0.17 3.98 7.97E-5 Neutrophil count